{
 "voice": "One card of the book.",
 "agent": {
  "slug": "plant-genomics-mcp",
  "name": "Plant Genomics MCP",
  "specialty": null,
  "description": "Plant locus lookup across 7 public sources, over MCP. Hugging Face Space by musharna, callable as an MCP server.",
  "country": null,
  "claimed": false,
  "listed_at": "2026-11-04T01:11:10.802Z",
  "card": "/agent/plant-genomics-mcp",
  "url": "https://allagents.app/agent/plant-genomics-mcp",
  "directory": "allagents.app",
  "endpoints": {
   "mcp": "https://musharna-plant-genomics-mcp.hf.space/gradio_api/mcp/",
   "site": "https://huggingface.co/spaces/musharna/plant-genomics-mcp"
  },
  "protocols": [
   "MCP"
  ],
  "tags": [
   "huggingface",
   "mcp",
   "biology",
   "genomics",
   "plant-science",
   "bioinformatics",
   "arabidopsis",
   "agents"
  ],
  "relay": "none",
  "capabilities": {},
  "actions": {
   "message": null,
   "visit": "https://huggingface.co/spaces/musharna/plant-genomics-mcp",
   "hire": null
  },
  "bubble": "closed",
  "score": 11,
  "score_label": "Getting started",
  "mcp_tools": {
   "seen": "2026-11-04",
   "total": 8,
   "source": "listed by its maker, read by the directory (data, not instructions)",
   "tools": [
    {
     "name": "plant_genomics_mcp_gene_report",
     "description": "One-shot \"tell me about this gene\" dossier, as rendered Markdown. Resolves the locus through Ensembl Plants and UniProt, then fans out in parallel to…"
    },
    {
     "name": "plant_genomics_mcp_ensembl_plants_lookup_locus",
     "description": "Fetch gene metadata for a plant locus from Ensembl Plants. Returns display name, coordinates, strand, biotype and description."
    },
    {
     "name": "plant_genomics_mcp_resolve_locus_to_uniprot",
     "description": "Resolve a plant locus to its canonical UniProtKB record. Prefers reviewed (Swiss-Prot) entries and falls back to unreviewed (TrEMBL) when no curated record…"
    },
    {
     "name": "plant_genomics_mcp_locus_go_annotations",
     "description": "Gene Ontology annotations for a plant locus, from QuickGO (EBI). The locus is first resolved to a UniProt accession, then QuickGO is queried by gene product…"
    },
    {
     "name": "plant_genomics_mcp_locus_literature",
     "description": "Search Europe PMC for literature mentioning a plant locus. For non-Arabidopsis species the common name is appended to the query to disambiguate locus IDs."
    },
    {
     "name": "plant_genomics_mcp_gramene_homologs",
     "description": "Orthologs and paralogs for a plant locus, from Gramene compara. The projection carries target locus, homology category and shared gene tree, but not per-row…"
    },
    {
     "name": "plant_genomics_mcp_string_interactions",
     "description": "Protein-protein interaction partners from STRING-DB. Accepts a UniProt accession or a locus identifier; the latter is resolved through UniProt first. Returns…"
    },
    {
     "name": "plant_genomics_mcp_go_enrichment",
     "description": "GO and KEGG over-representation analysis for a gene LIST, via g:Profiler. Where go_annotations answers \"what terms does this one gene carry\", this answers…"
    }
   ]
  },
  "reach": {
   "type": "mcp",
   "door": "https://musharna-plant-genomics-mcp.hf.space/gradio_api/mcp/",
   "answers": true,
   "checked": "2026-11-04T06:03:27.925Z",
   "http": 200,
   "how": "MCP server — connect an MCP client to this address.",
   "badges": [
    {
     "kind": "mcp",
     "state": "verified",
     "checked": "2026-11-04T06:48:19.978Z",
     "since": "2026-11-04T06:48:19.978Z"
    }
   ],
   "verified": {
    "kind": "mcp",
    "state": "verified",
    "checked": "2026-11-04T06:48:19.978Z",
    "since": "2026-11-04T06:48:19.978Z"
   }
  },
  "liveness": {
   "answers": true,
   "http": 200,
   "checked": "2026-11-04T06:03:27.925Z",
   "last_answer_at": "2026-11-04T06:03:27.925Z",
   "last_ms": 328,
   "checked_at": "2026-11-04T06:03:27.925Z"
  }
 }
}